Multi-lag cluster designs for estimating the semivariogram for sediments affected by effluent discharges offshore in San Diego

Maps are useful tools for understanding, managing, and protecting the marine environment, yet few useful and statistically defensible maps of environmental quality and aquatic resources have been developed in near-coastal regions. Current environmental management efforts, such as ocean monitoring by sewage dischargers, routinely sample areas of potential impact using sparse sampling grids. Heterogeneous oceanic conditions often make extrapolation from these grids to non-sampled locations questionable. Although rarely applied in coastal monitoring, kriging offers a more rigorous statistical approach to mapping and allows confidence intervals to be calculated for predictions. Its usefulness relies on accurate models of the spatial variability through estimating the semivariogram. Many optimal designs for estimating the semivariogram have been proposed, but these designs are often difficult to implement in practice. In this paper, we present simple design strategies for augmenting existing monitoring designs with the goal of estimating the semivariogram. In particular, we investigate a multi-lag cluster design strategy, where clusters of sites, spaced at various lag distances, are placed around fixed stations on an existing sampling grid. We find that these multi-lag cluster designs provide improved accuracy in estimating the parameters of the semivariogram. Based on simulation study findings, we apply a multi-lag cluster enhancement to the monitoring grid for the City of San Diego’s Point Loma Wastewater Treatment Plant as part of a special study to map chemical contaminants in sediments around its sewage outfall.     

A mechanism for female choice of large males in the treefrog Hyla chrysoscelis

Summary In this study, we combine both field and laboratory experiments to address the effects of female preference for certain call characteristics on a large-male mating advantage in the treefrog H. chrysoscelis. In laboratory-choice experiments, females always chose the call with the lower fundamental frequency when call rate and call intensity were held constant and the difference in frequency between the two calls was 15%. The lower frequency call was preferred by 8 out of 12 females when the difference in fundamental frequency was 7.4%. These results are consistent with field comparisons of the size of unmated males calling within 2 m of a mated male: Male body size was negatively correlated with fundamental frequency and the greater the size difference, the more likely that the larger male mated. In field choice experiments, females preferred males with higher call rates. Since size differences between males used in this experiment averaged only 2.3 mm, we would not expect the fundamental frequency of a male's call to be the best predictor of mating success. Laboratory results demonstrated that call rate could override female preference for the low frequency call over the high frequency call, while intensity could at least dilute this preference. However, individual males in the field varied both call rate and the call intensity as perceived by the female. We suggest that the interaction between call rate, male size and mating success should be studied further through the use of field-choice experiments.     

Comparative water use of native and invasive plants at multiple scales: a global meta-analysis

Ecohydrology and invasive ecology have become increasingly important in the context of global climate change. This study presents the first in-depth analysis of the water use of invasive and native plants of the same growth form at multiple scales: leaf, plant, and ecosystem. We reanalyzed data for several hundred native and invasive species from over 40 published studies worldwide to glean global trends and to highlight how patterns vary depending on both scale and climate. We analyzed all pairwise combinations of co-occurring native and invasive species for higher comparative resolution of the likelihood of an invasive species using more water than a native species and tested for significance using bootstrap methods. At each scale, we found several-fold differences in water use between specific paired invasive and native species. At the leaf scale, we found a strong tendency for invasive species to have greater stomatal conductance than native species. At the plant scale, however, natives and invasives were equally likely to have the higher sap flow rates. Available data were much fewer for the ecosystem scale; nevertheless, we found that invasive-dominated ecosystems were more likely to have higher sap flow rates per unit ground area than native-dominated ecosystems. Ecosystem-scale evapotranspiration, on the other hand, was equally likely to be greater for systems dominated by invasive and native species of the same growth form. The inherent disconnects in the determination of water use when changing scales from leaf to plant to ecosystem reveal hypotheses for future studies and a critical need for more ecosystem-scale water use measurements in invasive- vs. native-dominated systems. The differences in water use of native and invasive species also depended strongly on climate, with the greater water use of invasives enhanced in hotter, wetter climates at the coarser scales.     

Unraveling the complexities of variation in female mate preference for vertical bars in the swordtail, Xiphophorus cortezi

Investigations into the nature of mate choice suggest that variation in female mate preferences is often context dependent, varying in response to genetic and environmental influences on female condition as well as to external environmental stimuli. Determining whether variation in female mate preference is adaptive requires understanding the variables involved that produce this variation and how they interact. Comparative, multivariate studies of wild-caught adult females can be used as initial assessments of variation in female mate preferences, providing valuable insights into the parameters that influence female preferences under natural conditions. We examined variation in female preferences for the pigment pattern vertical bars across five populations of the swordtail, Xiphophorus cortezi. The populations we examined are genetically differentiated and varied in the frequency of males and females with bars. We also considered a variable indicative of within-individual variation (size, as influenced by age) and a variable that varies across individuals (genotype for vertical bars: barred or barless). Using Akaike information criterion, all candidate models explaining variation in strength of preference included female bar state, female size, and population. We suggest that a combination of genetic (bar state) and environmental (female size) conditions influenced how they responded to experience with both male phenotypes in X. cortezi. Future studies should examine the possibility that barred and barless females respond differently over an environmental gradient.     

Comparing the Extent and Permanence of Headwater Streams From Two Field Surveys to Values From Hydrographic Databases and Maps

Supreme Court cases have questioned if jurisdiction under the Clean Water Act extends to water bodies such as streams without year‐round flow. Headwater streams are central to this issue because many periodically dry, and because little is known about their influence on navigable waters. An accurate account of the extent and flow permanence of headwater streams is critical to estimating downstream contributions. We compared the extent and permanence of headwater streams from two field surveys with values from databases and maps. The first used data from 29 headwater streams in nine U.S. forests, whereas the second had data from 178 headwater streams in Oregon. Synthetic networks developed from the nine‐forest survey indicated that 33 to 93% of the channel lacked year‐round flow. Seven of the nine forests were predicted to have >200% more channel length than portrayed in the high‐resolution National Hydrography Dataset (NHD). The NHD and topographic map classifications of permanence agreed with ~50% of the field determinations across ~300 headwater sites. Classification agreement with the field determinations generally increased with increasing resolution. However, the flow classification on soil maps only agreed with ~30% of the field determination despite depicting greater channel extent than other maps. Maps that include streams regardless of permanence and size will aid regulatory decisions and are fundamental to improving water quality monitoring and models.     

Diet of young Atlantic bluefin tuna (<Emphasis Type="Italic">Thunnus thynnus</Emphasis>) in eastern and western Atlantic foraging grounds

Atlantic bluefin tuna (Thunnus thynnus) are highly migratory predators whose abundance, distribution, and somatic condition have changed over the past decades. Prey community composition and abundance have also varied in several foraging grounds. To better understand underlying food webs and regional energy sources, we performed stomach content and stable isotope analyses on mainly juvenile (60–150 cm curved fork length) bluefin tuna captured in foraging grounds in the western (Mid-Atlantic Bight) and eastern (Bay of Biscay) Atlantic Ocean. In the Mid-Atlantic Bight, bluefin tuna diet was mainly sand lance (Ammodytes spp., 29% prey weight), consistent with historic findings. In the Bay of Biscay, krill (Meganyctiphanes norvegica) and anchovy (Engraulis encrasicolus) made up 39% prey weight, with relative consumption of each reflecting annual changes in prey abundance. Consumption of anchovies apparently declined after the local collapse of this prey resource. In both regions, stable isotope analysis results showed that juvenile bluefin tuna fed at a lower trophic position than indicated by stomach content analysis. In the Mid-Atlantic Bight, stable isotope analyses suggested that >30% of the diet was prey from lower trophic levels that composed <10% of the prey weights based upon traditional stomach content analyses. Trophic position was similar to juvenile fish sampled in the NW Atlantic but lower than juveniles sampled in the Mediterranean Sea in previous studies. Our findings indicate that juvenile bluefin tuna targeted a relatively small range of prey species and regional foraging patterns remained consistent over time in the Mid-Atlantic Bight but changed in relation to local prey availability in the Bay of Biscay.     

Nutrient Loadings to Streams of the Continental United States from Municipal and Industrial Effluent1

Maupin, Molly A. and Tamara Ivahnenko, 2011. Nutrient Loadings to Streams of the Continental United States From Municipal and Industrial Effluent. Journal of the American Water Resources Association (JAWRA) 47(5):950‐964. DOI: 10.1111/j.1752‐1688.2011.00576.x Abstract: Data from the United States Environmental Protection Agency Permit Compliance System national database were used to calculate annual total nitrogen (TN) and total phosphorus (TP) loads to surface waters from municipal and industrial facilities in six major regions of the United States for 1992, 1997, and 2002. Concentration and effluent flow data were examined for approximately 118,250 facilities in 45 states and the District of Columbia. Inconsistent and incomplete discharge locations, effluent flows, and effluent nutrient concentrations limited the use of these data for calculating nutrient loads. More concentrations were reported for major facilities, those discharging more than 1 million gallons per day, than for minor facilities, and more concentrations were reported for TP than for TN. Analytical methods to check and improve the quality of the Permit Compliance System data were used. Annual loads were calculated using “typical pollutant concentrations” to supplement missing concentrations based on the type and size of facilities. Annual nutrient loads for over 26,600 facilities were calculated for at least one of the three years. Sewage systems represented 74% of all TN loads and 58% of all TP loads. This work represents an initial set of data to develop a comprehensive and consistent national database of point‐source nutrient loads. These loads can be used to inform a wide range of water‐quality management, watershed modeling, and research efforts at multiple scales.     

Genomic erosion in a demographically recovered bird species during conservation rescue

The pink pigeon (Nesoenas mayeri) is an endemic species of Mauritius that has made a remarkable recovery after a severe population bottleneck in the 1970s to early 1990s. Prior to this bottleneck, an ex situ population was established from which captive-bred individuals were released into free-living subpopulations to increase population size and genetic variation. This conservation rescue led to rapid population recovery to 400–480 individuals, and the species was twice downlisted on the International Union for the Conservation of Nature (IUCN) Red List. We analyzed the impacts of the bottleneck and genetic rescue on neutral genetic variation during and after population recovery (1993–2008) with restriction site-associated sequencing, microsatellite analyses, and quantitative genetic analysis of studbook data of 1112 birds from zoos in Europe and the United States. We used computer simulations to study the predicted changes in genetic variation and population viability from the past into the future. Genetic variation declined rapidly, despite the population rebound, and the effective population size was approximately an order of magnitude smaller than census size. The species carried a high genetic load of circa 15 lethal equivalents for longevity. Our computer simulations predicted continued inbreeding will likely result in increased expression of deleterious mutations (i.e., a high realized load) and severe inbreeding depression. Without continued conservation actions, it is likely that the pink pigeon will go extinct in the wild within 100 years. Conservation rescue of the pink pigeon has been instrumental in the recovery of the free-living population. However, further genetic rescue with captive-bred birds from zoos is required to recover lost variation, reduce expression of harmful deleterious variation, and prevent extinction. The use of genomics and modeling data can inform IUCN assessments of the viability and extinction risk of species, and it helps in assessments of the conservation dependency of populations.     

Catalyzing sustainable fisheries management through behavior change interventions

Small-scale fisheries are an important livelihood and primary protein source for coastal communities in many of the poorest regions in the world, yet many are overfished and thus require effective and scalable management solutions. Positive ecological and socioeconomic responses to management typically lag behind immediate costs borne by fishers from fishing pressure reductions necessary for fisheries recovery. These short-term costs challenge the long-term success of these interventions. However, social marketing may increase perceptions of management benefits before ecological and socioeconomic benefits are fully realized, driving new social norms and ultimately long-term sustainable behavior change. By conducting underwater visual surveys to quantify ecological conditions and by conducting household surveys with community members to quantify their perceptions of management support and socioeconomic conditions, we assessed the impact of a standardized small-scale fisheries management intervention that was implemented across 41 sites in Brazil, Indonesia, and the Philippines. The intervention combines TURF reserves (community-based territorial use rights for fishing coupled with no-take marine reserves) with locally tailored social-marketing behavior change campaigns. Leveraging data across 22 indicators and 4 survey types, along with data from 3 control sites, we found that ecological and socioeconomic impacts varied and that communities supported the intervention and were already changing their fishing practices. These results suggest that communities were developing new social norms and fishing more sustainably before long-term ecological and socioeconomic benefits of fisheries management materialized.